Training materials
-
Comparing inferred cell compositions using MuSiC deconvolution
transcriptomics deconvo -
Understanding Barcodes
scintroduction -
Downstream Single-cell RNA analysis with RaceID
work-in-progress end-to-end -
Combining single cell datasets after pre-processing
paper-replication MIGHTS single-cell-CS -
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
paper-replication MIGHTS rmarkdown-notebook jupyter-notebook single-cell-CS-code -
Clustering 3K PBMCs with Scanpy
10x firstsc -
Importing files from public atlases
data import data management datamanipulation -
Single-cell ATAC-seq standard processing with SnapATAC2
10x epigenetics single-cell scmultiomics -
Generating a single cell matrix using Alevin and combining datasets (bash + R)
10x paper-replication MIGHTS jupyter-notebook single-cell-CS-code -
Removing the effects of the cell cycle
tricks