Training materials
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Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
paper-replication MIGHTS jupyter-notebook single-cell-CS-code -
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
paper-replication MIGHTS rmarkdown-notebook jupyter-notebook single-cell-CS-code -
Generating a single cell matrix using Alevin and combining datasets (bash + R)
10x paper-replication MIGHTS jupyter-notebook single-cell-CS-code -
Best practices for workflows in GitHub repositories
ro-crate jupyter-notebook -
RO-Crate in Python
ro-crate jupyter-notebook -
Python - Warm-up for statistics and machine learning
elixir ai-ml work-in-progress jupyter-notebook python -
Conda Environments For Software Development
conda jupyter-notebook python-modular -
Data Manipulation Olympics - SQL
cyoa sql jupyter-notebook next-steps -
dplyr & tidyverse for data processing
R rmarkdown-notebook jupyter-notebook r -
SQL with R
SQL R rmarkdown-notebook jupyter-notebook sql