Training materials
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2: RNA-seq counts to genes
limma-voom mouse QC end-to-end -
1: RNA-Seq reads to counts
collections mouse QC end-to-end -
RNA-Seq data analysis, clustering and visualisation tutorial
bulk rna-seq collections mouse clustering PCA work-in-progress introduction -
3: RNA-seq genes to pathways
mouse end-to-end -
Optimizing DNA Sequences for Biological Functions using a DNA LLM
elixir ai-ml Large Language Model work-in-progress jupyter-notebook gai-llm -
Deep Learning (without Generative Artificial Intelligence) using Python
elixir ai-ml work-in-progress jupyter-notebook -
Generating Artificial Yeast DNA Sequences using a DNA LLM
elixir ai-ml Large Language Model jupyter-notebook gai-llm -
Neural networks using Python
elixir ai-ml work-in-progress jupyter-notebook -
Predicting Mutation Impact with Zero-shot Learning using a pretrained DNA LLM
elixir ai-ml Large Language Model jupyter-notebook gai-llm -
Fine-tuning a LLM for DNA Sequence Classification
elixir ai-ml Large Language Model jupyter-notebook gai-llm